From 382adb89c564c8424133a9c32c4eeb7c21d8eb72 Mon Sep 17 00:00:00 2001 From: chhylp123 Date: Mon, 14 Oct 2024 12:30:48 -0400 Subject: [PATCH] update README --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 5b83055..7df8c59 100644 --- a/README.md +++ b/README.md @@ -164,7 +164,7 @@ For the single-sample telomere-to-telomere assembly with Hi-C reads: ```sh hifiasm -o NA12878.asm -t32 --ul ul.fq.gz --h1 read1.fq.gz --h2 read2.fq.gz HiFi-reads.fq.gz ``` -For the trio-binning telomere-to-telomere assembly； +For the trio-binning telomere-to-telomere assembly: ```sh hifiasm -o NA12878.asm -t32 --ul ul.fq.gz -1 pat.yak -2 mat.yak HiFi-reads.fq.gz ``` @@ -174,7 +174,7 @@ hifiasm -o NA12878.asm -t32 --ul ul.fq.gz -1 pat.yak -2 mat.yak HiFi-reads.fq.gz For diploid haplotype-resolved genome assembly, hifiasm can further enhance assembly contiguity by introducing scaffolding. It leverages the assemblies of the two haplotypes to scaffold each other. Specifically, if there is a gap within the haplotype 1 assembly, hifiasm will use the corresponding -homologous region in haplotype 2 to scaffold haplotype 1. Below is an example using the `--dual-scaf` option: +homologous region in haplotype 2 to scaffold haplotype 1. Below is an example using the `--dual-scaf` option. ```sh hifiasm -o NA12878.asm -t32 --dual-scaf HiFi-reads.fq.gz ```