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moved sorting to anchor.cpp for future changes

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Heng Li
2020-04-02 19:18:29 -04:00
parent 483ceb852c
commit 3838482851
2 changed files with 16 additions and 6 deletions
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Hash_Table.cpp
-6
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@@ -12,9 +12,6 @@ pthread_mutex_t output_mutex;
#define overlap_region_key(a) ((a).y_id)
KRADIX_SORT_INIT(overlap_region_sort, overlap_region, overlap_region_key, member_size(overlap_region, y_id))
#define oreg_xs_lt(a, b) (((uint64_t)(a).x_pos_s<<32|(a).x_pos_e) < ((uint64_t)(b).x_pos_s<<32|(b).x_pos_e))
KSORT_INIT(or_xs, overlap_region, oreg_xs_lt)
void overlap_region_sort_y_id(overlap_region *a, long long n)
{
radix_sort_overlap_region_sort(a, a + n);
@@ -648,13 +645,10 @@ void calculate_overlap_region_by_chaining(Candidates_list* candidates, overlap_r
if (tmp_region.x_id != tmp_region.y_id)
{
append_inexact_overlap_region_alloc(overlap_list, &tmp_region, R_INF, add_beg_end);
///append_inexact_overlap_region_alloc_back(overlap_list, &tmp_region, R_INF);
}
}
destory_fake_cigar(&(tmp_region.f_cigar));
ks_introsort_or_xs(overlap_list->length, overlap_list->list);
}
void append_window_list(overlap_region* region, uint64_t x_start, uint64_t x_end, int y_start, int y_end, int error,