From 384b721d847b7d9f164ef3b41a05da3589ed8557 Mon Sep 17 00:00:00 2001 From: chhylp123 Date: Fri, 10 Mar 2023 15:46:23 -0500 Subject: [PATCH] clean output --- CommandLines.h | 2 +- gfa_ut.cpp | 20 ++++++++++---------- 2 files changed, 11 insertions(+), 11 deletions(-) diff --git a/CommandLines.h b/CommandLines.h index dceb613..e737492 100644 --- a/CommandLines.h +++ b/CommandLines.h @@ -5,7 +5,7 @@ #include #include -#define HA_VERSION "0.19.0-r553" +#define HA_VERSION "0.19.0-r554" #define VERBOSE 0 diff --git a/gfa_ut.cpp b/gfa_ut.cpp index e91e835..f20c097 100644 --- a/gfa_ut.cpp +++ b/gfa_ut.cpp @@ -16473,7 +16473,7 @@ ul2ul_idx_t *gen_ul2ul(ul_resolve_t *uidx, ug_opt_t *uopt, ulg_opt_t *ulopt, uin kt_for(uidx->str_b.n_thread, worker_integert_debug_sym, uidx, z->tot);///all ul + ug print_integert_ovlp_stat(z); - print_uls_seq(uidx, asm_opt.output_file_name); + // print_uls_seq(uidx, asm_opt.output_file_name); // print_uls_ovs(uidx, asm_opt.output_file_name); z->i_g = integer_sg_gen(uidx, uopt->min_ovlp); @@ -17234,11 +17234,11 @@ ul_renew_t *ropt, const char *bin_file, uint64_t free_uld, uint64_t is_bridg, ui // fprintf(stderr, "2[M::%s]\n", __func__); // exit(1); - char* gfa_name = NULL; MALLOC(gfa_name, strlen(o_file)+strlen(bin_file)+50); - sprintf(gfa_name, "%s.%s", o_file, bin_file); - print_debug_gfa(sg, init_ug, uopt->coverage_cut, gfa_name, uopt->sources, uopt->ruIndex, uopt->max_hang, uopt->min_ovlp, 0, 0, 0); - print_debug_gfa(sg, init_ug, uopt->coverage_cut, gfa_name, uopt->sources, uopt->ruIndex, uopt->max_hang, uopt->min_ovlp, 0, 0, 1); - free(gfa_name); + // char* gfa_name = NULL; MALLOC(gfa_name, strlen(o_file)+strlen(bin_file)+50); + // sprintf(gfa_name, "%s.%s", o_file, bin_file); + // print_debug_gfa(sg, init_ug, uopt->coverage_cut, gfa_name, uopt->sources, uopt->ruIndex, uopt->max_hang, uopt->min_ovlp, 0, 0, 0); + // print_debug_gfa(sg, init_ug, uopt->coverage_cut, gfa_name, uopt->sources, uopt->ruIndex, uopt->max_hang, uopt->min_ovlp, 0, 0, 1); + // free(gfa_name); filter_sg_by_ug(sg, init_ug, uopt); @@ -17257,8 +17257,8 @@ ul_renew_t *ropt, const char *bin_file, uint64_t free_uld, uint64_t is_bridg, ui // print_ul_alignment(init_ug, &UL_INF, 47072, "after-2"); // exit(1); // if(free_uld) { - print_raw_uls_seq(uidx, asm_opt.output_file_name); - print_raw_uls_aln(uidx, asm_opt.output_file_name); + // print_raw_uls_seq(uidx, asm_opt.output_file_name); + // print_raw_uls_aln(uidx, asm_opt.output_file_name); // } ul_re_correct(uidx, asm_opt.integer_correct_round/**3**/); @@ -17273,9 +17273,9 @@ ul_renew_t *ropt, const char *bin_file, uint64_t free_uld, uint64_t is_bridg, ui // free(r_het); destory_bubbles(bub); free(bub); // if(free_uld) { - uidx->uovl.hybrid_ug = gen_hybrid_ug(uidx, uidx->uovl.h_usg); + // uidx->uovl.hybrid_ug = gen_hybrid_ug(uidx, uidx->uovl.h_usg); // // print_debug_gfa(sg, uidx->uovl.hybrid_ug, uopt->coverage_cut, "hybrid_ug", uopt->sources, uopt->ruIndex, uopt->max_hang, uopt->min_ovlp, 0, 0, 1); - print_debug_gfa(sg, uidx->uovl.hybrid_ug, uopt->coverage_cut, "hybrid_ug", uopt->sources, uopt->ruIndex, uopt->max_hang, uopt->min_ovlp, 0, 0, 0); + // print_debug_gfa(sg, uidx->uovl.hybrid_ug, uopt->coverage_cut, "hybrid_ug", uopt->sources, uopt->ruIndex, uopt->max_hang, uopt->min_ovlp, 0, 0, 0); // // print_debug_gfa(sg, init_ug, uopt->coverage_cut, bin_file, uopt->sources, uopt->ruIndex, uopt->max_hang, uopt->min_ovlp, 0, 0, 0); // } // if(is_trio) gen_ul_trio_graph(uopt, uidx, o_file);