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NOT WORKING!!! removed small_hash_table

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Heng Li
2020-03-24 00:57:00 -04:00
parent 59a9d62df9
commit 398e73022b
3 changed files with 11 additions and 218 deletions
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Makefile
+4 -5
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@@ -1,11 +1,11 @@
CXX= g++
CXXFLAGS= -g -O3 -msse4.2 -mpopcnt -fomit-frame-pointer -Wall #-fsanitize=address -fno-omit-frame-pointer#-Winline
CXXFLAGS= -g -O3 -msse4.2 -mpopcnt -fomit-frame-pointer -Wall
CPPFLAGS=
INCLUDES=
OBJS= Output.o CommandLines.o Process_Read.o Assembly.o kmer.o Hash_Table.o \
POA.o Correct.o Levenshtein_distance.o Overlaps.o Trio.o kthread.o #ksw2_extz2_sse.o
OBJS= Output.o CommandLines.o Process_Read.o Assembly.o Hash_Table.o \
POA.o Correct.o Levenshtein_distance.o Overlaps.o Trio.o kthread.o
EXE= hifiasm
LIBS= -lz -lpthread -lm #-fsanitize=address -fno-omit-frame-pointer
LIBS= -lz -lpthread -lm
ifneq ($(asan),)
CXXFLAGS+=-fsanitize=address
@@ -51,7 +51,6 @@ POA.o: kvec.h kdq.h CommandLines.h Correct.h Levenshtein_distance.h
Process_Read.o: Process_Read.h kseq.h Overlaps.h kvec.h kdq.h CommandLines.h
Trio.o: khashl.h kthread.h Process_Read.h kseq.h Overlaps.h kvec.h kdq.h
Trio.o: CommandLines.h Trio.h kmer.h
kmer.o: kmer.h Process_Read.h kseq.h Overlaps.h kvec.h kdq.h CommandLines.h
kthread.o: kthread.h
main.o: CommandLines.h Process_Read.h kseq.h Overlaps.h kvec.h kdq.h
main.o: Assembly.h Levenshtein_distance.h