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backup hic

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chhylp123
2021-04-18 21:57:16 -04:00
parent 49ead1ef35
commit 39c19618e8
2 changed files with 81 additions and 33 deletions
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51
hic.cpp
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@@ -13514,6 +13514,39 @@ void idx_hc_links(kvec_pe_hit* hits, ha_ug_index* idx, bubble_type* bub)
}
}
inline uint32_t trans_checking_pass(bubble_type* bub, kv_u_trans_t *ref, uint32_t x, uint32_t y)
{
if(u_trans_n(*ref, x) == 0 || u_trans_n(*ref, y) == 0) return 0;
u_trans_t *a = NULL;
uint32_t n, i, f[2], qn, tn;
qn = x; tn = y;
a = u_trans_a(*ref, qn); n = u_trans_n(*ref, qn);
for (i = 0, f[0] = f[1] = 0; i < n; i++)
{
if(a[i].del) continue;
if(a[i].f == RC_2) continue;
if(IF_HOM(a[i].tn, *bub)) continue;
f[(a[i].tn == tn && a[i].f != RC_2)]++;
}
if(f[0] != 0) return 0;
if(f[1] == 0) return 0;
qn = y; tn = x;
a = u_trans_a(*ref, qn); n = u_trans_n(*ref, qn);
for (i = 0, f[0] = f[1] = 0; i < n; i++)
{
if(a[i].del) continue;
if(IF_HOM(a[i].tn, *bub)) continue;
f[(a[i].tn == tn && a[i].f != RC_2)]++;
}
if(f[0] != 0) return 0;
if(f[1] == 0) return 0;
fprintf(stderr, "M::%s::s-utg%.6ul<----->d-utg%.6ul\n", __func__, x+1, y+1);
return 1;
}
void weight_kv_u_trans(ha_ug_index* idx, kvec_pe_hit* hits, hc_links* link, bubble_type* bub,
kv_u_trans_t *ta, trans_idx* dis)
{
@@ -13653,7 +13686,7 @@ pe_hit *hits, uint32_t occ, uint32_t qid, uint32_t qs, uint32_t qe, uint32_t tid
return w;
}
double get_hits_weight(ha_ug_index* idx, kvec_pe_hit* hits, hc_links* link, trans_idx* dis,
double get_hits_weight(ha_ug_index* idx, bubble_type* bub, kvec_pe_hit* hits, hc_links* link, trans_idx* dis,
u_trans_t *t_a, uint32_t t_n, uint32_t qid, kv_u_trans_t *ta_idx)
{
/****************************may have bugs********************************/
@@ -13666,6 +13699,8 @@ u_trans_t *t_a, uint32_t t_n, uint32_t qid, kv_u_trans_t *ta_idx)
double w, i_w;
for (k = 0, w = 0; k < t_n; k++)
{
if(IF_HOM(qid, *bub)) continue;
if(IF_HOM(t_a[k].tn, *bub)) continue;
/****************************may have bugs********************************/
if(qid != t_a[k].tn)
{
@@ -13705,6 +13740,7 @@ u_trans_t *t_a, uint32_t t_n, uint32_t qid, kv_u_trans_t *ta_idx)
return w;
}
void adjust_weight_kv_u_trans(ha_ug_index* idx, kvec_pe_hit* hits, hc_links* link, bubble_type* bub,
kv_u_trans_t *ta, kv_u_trans_t *ref, trans_idx* dis)
{
@@ -13723,12 +13759,15 @@ kv_u_trans_t *ta, kv_u_trans_t *ref, trans_idx* dis)
{
ta->a[m].nw /= (double)(MIN(hits->occ.a[ta->a[m].qn], hits->occ.a[ta->a[m].tn]));
}
/*******************************for debug************************************/
trans_checking_pass(bub, ref, ta->a[i].qn, ta->a[i].tn);
// if(trans_checking_pass(bub, ref, ta->a[i].qn, ta->a[i].tn)) ta->a[m].nw = 0;
/*******************************for debug************************************/
m++;
}
ta->n = m;
// fprintf(stderr, "+++++ta->n=%u\n", (uint32_t)ta->n);
for (k = 0; k < ta->idx.n; k++)///all nodes
{
if(IF_HOM(k, *bub)) continue;
@@ -13743,10 +13782,10 @@ kv_u_trans_t *ta, kv_u_trans_t *ref, trans_idx* dis)
if(IF_HOM(a[i].qn, *bub)) continue;
if(IF_HOM(a[i].tn, *bub)) continue;
///(qn, tn^)
a[i].nw += get_hits_weight(idx, hits, link, dis,
a[i].nw += get_hits_weight(idx, bub, hits, link, dis,
u_trans_a(*ref, a[i].tn), u_trans_n(*ref, a[i].tn), a[i].qn, ta);
///(qn^1, tn)
a[i].nw += get_hits_weight(idx, hits, link, dis,
a[i].nw += get_hits_weight(idx, bub, hits, link, dis,
u_trans_a(*ref, a[i].qn), u_trans_n(*ref, a[i].qn), a[i].tn, ta);
}
@@ -13759,10 +13798,10 @@ kv_u_trans_t *ta, kv_u_trans_t *ref, trans_idx* dis)
if(vis[tn]) continue;
if(qn == tn) continue;
///(qn, tn^)
w += get_hits_weight(idx, hits, link, dis,
w += get_hits_weight(idx, bub, hits, link, dis,
u_trans_a(*ref, tn), u_trans_n(*ref, tn), qn, ta);
///(qn^1, tn)
w += get_hits_weight(idx, hits, link, dis,
w += get_hits_weight(idx, bub, hits, link, dis,
u_trans_a(*ref, qn), u_trans_n(*ref, qn), tn, ta);
if(w == 0) continue;
kv_pushp(u_trans_t, *ta, &p);