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changed the output file names

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This commit is contained in:
Heng Li
2019-12-30 12:01:54 -05:00
parent 30eddefc57
commit 3a61b1b0b0
4 changed files with 102 additions and 78 deletions
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CommandLines.cpp
+3 -4
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@@ -21,8 +21,7 @@ void Print_H(hifiasm_opt_t* asm_opt)
{
fprintf(stderr, "Usage: hifiasm [options] <in_1.fq> <in_2.fq> <...>\n");
fprintf(stderr, "Options:\n");
///fprintf(stderr, " -q FILE input in the fastq(.gz)/fasta(.gz) formats\n");
fprintf(stderr, " -o FILE output assembly (in gfa format) and corrected reads [%s]\n", asm_opt->output_file_name);
fprintf(stderr, " -o FILE prefix of output files [%s]\n", asm_opt->output_file_name);
fprintf(stderr, " -t INT number of threads [%d]\n", asm_opt->thread_num);
fprintf(stderr, " -r INT round of correction [%d]\n", asm_opt->number_of_round);
fprintf(stderr, " -a INT round of assembly cleaning [%d]\n", asm_opt->clean_round);
@@ -36,7 +35,7 @@ void Print_H(hifiasm_opt_t* asm_opt)
fprintf(stderr, " -y FLOAT min overlap drop ratio [%.2g]\n", asm_opt->min_drop_rate);
fprintf(stderr, " -v show version number\n");
fprintf(stderr, " -h show help information\n");
fprintf(stderr, "Example: ./hifiasm -o NA12878.asm -k 40 -t 32 -r 2 NA12878.fq.gz\n");
fprintf(stderr, "Example: ./hifiasm -o NA12878.asm -t 32 NA12878.fq.gz\n");
}
@@ -247,4 +246,4 @@ int CommandLine_process(int argc, char *argv[], hifiasm_opt_t* asm_opt)
get_queries(argc, argv, &opt, asm_opt);
return check_option(asm_opt);
}
}