xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-30 13:48:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

disable debug

Browse Source
This commit is contained in:
chhylp123
2020-03-23 00:25:20 -04:00
parent ee2573a05c
commit 3c1d3cf6a1
2 changed files with 28 additions and 17 deletions
Download Patch File Download Diff File Expand all files Collapse all files
Overlaps.cpp
+22 -16
View File
@@ -25060,11 +25060,14 @@ ma_sub_t* coverage_cut, int debug_g)
asg_arc_del_simple_circle_untig(sources, coverage_cut, sg, 100, 0);
/*******************************for debug***************************************/
write_debug_graph(sg, sources, coverage_cut, output_file_name, n_read, reverse_sources, ruIndex);
debug_gfa:;
/*******************************for debug***************************************/
if(VERBOSE_GFA >= 1)
{
/*******************************for debug***************************************/
write_debug_graph(sg, sources, coverage_cut, output_file_name, n_read, reverse_sources, ruIndex);
debug_gfa:;
/*******************************for debug***************************************/
}
/**
debug_ma_hit_t(sources, coverage_cut, n_read, max_hang_length,
mini_overlap_length);
@@ -25137,20 +25140,23 @@ long long bubble_dist, int read_graph, int write)
///actually min_thres = asm_opt.max_short_tip + 1 there are asm_opt.max_short_tip reads
min_thres = asm_opt.max_short_tip + 1;
if(load_debug_graph(&sg, &sources, &coverage_cut, output_file_name, &reverse_sources, &ruIndex))
if(VERBOSE_GFA >= 1)
{
fprintf(stderr, "debug gfa has been loaded\n");
clean_graph(min_dp, sources, reverse_sources, n_read, readLen, mini_overlap_length,
max_hang_length, clean_round, gap_fuzz, min_ovlp_drop_ratio, max_ovlp_drop_ratio,
output_file_name, bubble_dist, read_graph, &ruIndex, sg, coverage_cut, 1);
asg_destroy(sg);
free(coverage_cut);
destory_R_to_U(&ruIndex);
return;
if(load_debug_graph(&sg, &sources, &coverage_cut, output_file_name, &reverse_sources, &ruIndex))
{
fprintf(stderr, "debug gfa has been loaded\n");
clean_graph(min_dp, sources, reverse_sources, n_read, readLen, mini_overlap_length,
max_hang_length, clean_round, gap_fuzz, min_ovlp_drop_ratio, max_ovlp_drop_ratio,
output_file_name, bubble_dist, read_graph, &ruIndex, sg, coverage_cut, 1);
asg_destroy(sg);
free(coverage_cut);
destory_R_to_U(&ruIndex);
return;
}
}
if (asm_opt.write_index_to_disk && write)
{