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Reduce memory requirement

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This commit is contained in:
Haoyu Cheng
2019-05-16 00:22:20 -04:00
parent 45355a1103
commit 3c5799aa1b
12 changed files with 320 additions and 39 deletions
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Hash_Table.h
+3
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@@ -234,6 +234,7 @@ inline uint64_t locate_Total_Pos_Table(Total_Pos_Table* PCB, Hash_code* code, k_
int cmp_k_mer_pos(const void * a, const void * b);
//inline uint64_t insert_Total_Pos_Table(Total_Pos_Table* PCB, Hash_code* code, int k, uint64_t readID, uint64_t pos, uint64_t direction)
inline uint64_t insert_Total_Pos_Table(Total_Pos_Table* PCB, Hash_code* code, int k, uint64_t readID, uint64_t pos)
{
k_mer_pos* list;
@@ -253,11 +254,13 @@ inline uint64_t insert_Total_Pos_Table(Total_Pos_Table* PCB, Hash_code* code, in
{
list[0].offset++;
list[list[0].offset].readID = readID;
///list[list[0].offset].readID = readID|direction;
list[list[0].offset].offset = pos;
}
else
{
list[0].readID = readID;
///list[0].readID = readID|direction;
list[0].offset = pos;
flag = 1;
}