xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-02 02:58:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

debug

Browse Source
This commit is contained in:
Haoyu Cheng
2019-07-09 22:15:58 -04:00
parent 4eddb02dbd
commit 3d88530385
4 changed files with 500 additions and 17 deletions
Download Patch File Download Diff File Expand all files Collapse all files
Assembly.cpp
+31 -14
View File
@@ -16,6 +16,9 @@ All_reads R_INF;
pthread_mutex_t statistics;
long long total_matched_overlap_0 = 0;
long long total_matched_overlap_1 = 0;
long long total_potiental_matched_overlap_0 = 0;
long long total_potiental_matched_overlap_1 = 0;
long long complete_threads = 0;
@@ -689,6 +692,8 @@ void* Overlap_calculate_heap_merge(void* arg)
long long matched_overlap_0 = 0;
long long matched_overlap_1 = 0;
long long potiental_matched_overlap_0 = 0;
long long potiental_matched_overlap_1 = 0;
long long j;
int thr_ID = *((int*)arg);
@@ -698,6 +703,10 @@ void* Overlap_calculate_heap_merge(void* arg)
UC_Read g_read;
init_UC_Read(&g_read);
UC_Read overlap_read;
init_UC_Read(&overlap_read);
HPC_seq HPC_read;
Hash_code k_code;
uint64_t code;
@@ -852,29 +861,30 @@ void* Overlap_calculate_heap_merge(void* arg)
///merge_k_mer_pos_list_alloc(&array_list, &l);
merge_k_mer_pos_list_alloc_heap_sort(&array_list, &l, &heap);
/**
if (array_list.length < 3)
{
merge_k_mer_pos_list_alloc(&array_list, &l);
}
else
{
merge_k_mer_pos_list_alloc_heap_sort_advance(&array_list, &l, &heap);
}
**/
// if (array_list.length < 3)
// {
// merge_k_mer_pos_list_alloc(&array_list, &l);
// }
// else
// {
// merge_k_mer_pos_list_alloc_heap_sort_advance(&array_list, &l, &heap);
// }
///以x_pos_e，即结束位置为主元排序
calculate_overlap_region(&l, &overlap_list, i, g_read.length, &R_INF);
correct_overlap(&overlap_list, &R_INF, &g_read, &correct);
correct_overlap(&overlap_list, &R_INF, &g_read, &correct, &overlap_read,
&matched_overlap_0, &matched_overlap_1, &potiental_matched_overlap_0, &potiental_matched_overlap_1);
/**
for (j = 0; j < overlap_list.length; j++)
{
long long Len_x = overlap_list.list[j].x_pos_e - overlap_list.list[j].x_pos_s + 1;
if (Len_x * 0.6 <= overlap_list.list[j].align_length)
if (Len_x * 0.9 <= overlap_list.list[j].align_length)
{
if (overlap_list.list[j].y_pos_strand == 0)
{
@@ -886,6 +896,7 @@ void* Overlap_calculate_heap_merge(void* arg)
}
}
}
**/
/**
POA_i = 0;
@@ -988,6 +999,8 @@ void* Overlap_calculate_heap_merge(void* arg)
destory_Graph(&POA_Graph);
destory_UC_Read(&g_read);
destory_UC_Read(&overlap_read);
destory_Correct_dumy(&correct);
@@ -995,11 +1008,15 @@ void* Overlap_calculate_heap_merge(void* arg)
pthread_mutex_lock(&statistics);
total_matched_overlap_0 += matched_overlap_0;
total_matched_overlap_1 += matched_overlap_1;
total_potiental_matched_overlap_0 += potiental_matched_overlap_0;
total_potiental_matched_overlap_1 += potiental_matched_overlap_1;
complete_threads++;
if(complete_threads == thread_num)
{
fprintf(stderr, "total_matched_overlap_0: %llu\n", total_matched_overlap_0);
fprintf(stderr, "total_matched_overlap_1: %llu\n", total_matched_overlap_1);
fprintf(stderr, "total_potiental_matched_overlap_0: %llu\n", total_potiental_matched_overlap_0);
fprintf(stderr, "total_potiental_matched_overlap_1: %llu\n", total_potiental_matched_overlap_1);
}
pthread_mutex_unlock(&statistics);
}