From 4095fc28395c513b5c4ad1224f866227fd559b21 Mon Sep 17 00:00:00 2001 From: Haoyu Cheng Date: Sat, 28 Dec 2019 16:55:21 -0500 Subject: [PATCH] update result --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index d0355c8..505296f 100644 --- a/README.md +++ b/README.md @@ -24,9 +24,9 @@ Hifiasm is a standalone and lightweight assembler, which does not need external |Dataset|GSize|Cov|Asm options|CPU time|Wall time|RAM|[unitig][unitig]/[contig][unitig] N50[1]| |:---------------|-----:|-----:|:---------------------|-------:|--------:|----:|----------------:| |[Human NA12878]|3Gb|x28|-k 40 -t 42 -r 2|200h| 5h32m|?114G|93.5Kb/18.6Mb| -|[Human HG002]|3Gb|x43|-k 40 -t 42 -r 2|?405h10m|?12h7m|?146G|320kb/29.3Mb| -|[Human CHM13]|3Gb|x27|-k 40 -t 42 -r 2|?|?|?|NA[2]/39.8Mb| -|[Butterfly]|358Mb|x35|-k 40 -t 42 -r 2 -z 20|17.1h|36m|16G|7.5Mb/NA[3]| +|[Human HG002]|3Gb|x43|-k 40 -t 42 -r 2|405h10m|12h7m|146G|320kb/29.3Mb| +|[Human CHM13]|3Gb|x27|-k 40 -t 42 -r 2|157h28m|5h10m|85.8G|[2]/39.8Mb| +|[Butterfly]|358Mb|x35|-k 40 -t 42 -r 2 -z 20|17h6m|36m|16G|7.5Mb/NA[3]| [1] unitig N50 is the N50 of assembly graph with haplotype information (i.e., bubbles), while the contig N50 is the N50 of haplotype collapsed assembly (i.e., without bubbles). [2] CHM13 is a homozygous sample, so that unitig N50 makes no sense.