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correction

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chhylp123
2021-05-11 13:01:06 -04:00
parent 7918396d21
commit 4105dd360e
6 changed files with 711 additions and 41 deletions
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Overlaps.h
+4 -3
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@@ -4,6 +4,7 @@
#include <stdint.h>
#include "kvec.h"
#include "kdq.h"
#include "ksort.h"
///#define MIN_OVERLAP_LEN 2000
///#define MIN_OVERLAP_LEN 500
@@ -320,11 +321,10 @@ static inline asg_arc_t *asg_arc_pushp(asg_t *g)
// set asg_arc_t::del for v->w
static inline void asg_arc_del(asg_t *g, uint32_t v, uint32_t w, int del)
{
uint32_t i, nv = asg_arc_n(g, v)/**, found = 0**/;
uint32_t i, nv = asg_arc_n(g, v);
asg_arc_t *av = asg_arc_a(g, v);
for (i = 0; i < nv; ++i)
if (av[i].v == w) av[i].del = !!del/**, found = 1**/;
/**if(found == 0) fprintf(stderr, "ERROR\n");**/
if (av[i].v == w) av[i].del = !!del;
}
// set asg_arc_t::del and asg_seq_t::del to 1 for sequence s and all its associated arcs
@@ -1217,6 +1217,7 @@ ma_hit_t_alloc* sources, ma_hit_t_alloc* reverse_sources, ma_sub_t* coverage_cut
long long tipsLen, float tip_drop_ratio, long long stops_threshold,
R_to_U* ruIndex, float chimeric_rate, float drop_ratio, int max_hang, int min_ovlp,
kvec_asg_arc_t_warp* new_rtg_edges, bub_label_t* b_mask_t);
uint32_t cmp_untig_graph(ma_ug_t *src, ma_ug_t *dest);
#define JUNK_COV 5
#define DISCARD_RATE 0.8