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remove ksw2 from makefile

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chhylp123
2023-05-12 20:57:11 -04:00
parent 2c18ec30da
commit 44475e2665
2 changed files with 3 additions and 3 deletions
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2
CommandLines.h
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@@ -5,7 +5,7 @@
#include <pthread.h> #include <pthread.h>
#include <stdint.h> #include <stdint.h>
#define HA_VERSION "0.19.5-r589" #define HA_VERSION "0.19.5-r590"
#define VERBOSE 0 #define VERBOSE 0

4
Makefile
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@@ -6,7 +6,7 @@ CPPFLAGS=
INCLUDES= INCLUDES=
OBJS= CommandLines.o Process_Read.o Assembly.o Hash_Table.o \ OBJS= CommandLines.o Process_Read.o Assembly.o Hash_Table.o \
POA.o Correct.o Levenshtein_distance.o Overlaps.o Trio.o kthread.o Purge_Dups.o \ POA.o Correct.o Levenshtein_distance.o Overlaps.o Trio.o kthread.o Purge_Dups.o \
htab.o hist.o sketch.o anchor.o extract.o sys.o ksw2_extz2_sse.o hic.o rcut.o horder.o \ htab.o hist.o sketch.o anchor.o extract.o sys.o hic.o rcut.o horder.o \
tovlp.o inter.o kalloc.o gfa_ut.o gchain_map.o tovlp.o inter.o kalloc.o gfa_ut.o gchain_map.o
EXE= hifiasm EXE= hifiasm
LIBS= -lz -lpthread -lm LIBS= -lz -lpthread -lm
@@ -44,7 +44,7 @@ Assembly.o: kthread.h
CommandLines.o: CommandLines.h ketopt.h CommandLines.o: CommandLines.h ketopt.h
Correct.o: Correct.h Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h Correct.o: Correct.h Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h
Correct.o: kdq.h CommandLines.h Levenshtein_distance.h POA.h Assembly.h Correct.o: kdq.h CommandLines.h Levenshtein_distance.h POA.h Assembly.h
Correct.o: ksw2.h ksort.h Correct.o: ksort.h
Hash_Table.o: Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h kdq.h Hash_Table.o: Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h kdq.h
Hash_Table.o: CommandLines.h ksort.h Hash_Table.o: CommandLines.h ksort.h
Levenshtein_distance.o: Levenshtein_distance.h Levenshtein_distance.o: Levenshtein_distance.h