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backup r321

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chhylp123
2021-04-01 21:02:57 -04:00
parent 0605aa1961
commit 46e899bbae
11 changed files with 1494 additions and 401 deletions
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CommandLines.h
+5 -1
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@@ -3,7 +3,7 @@
#include <pthread.h>
#define HA_VERSION "0.14.2-r317"
#define HA_VERSION "0.14.2-r320"
#define VERBOSE 0
@@ -18,6 +18,7 @@
#define HA_F_BAN_POST_JOIN 0x100
#define HA_F_BAN_ASSEMBLY 0x200
#define HA_F_HIGH_HET 0x400
#define HA_F_PARTITION 0x800
#define HA_MIN_OV_DIFF 0.02 // min sequence divergence in an overlap
@@ -74,6 +75,7 @@ typedef struct {
int recover_atg_cov_min;
int recover_atg_cov_max;
int hom_global_coverage;
int hom_global_coverage_set;
int bed_inconsist_rate;
int hic_inconsist_rate;
@@ -93,6 +95,8 @@ typedef struct {
long long mem_buf;
long long coverage;
int hap_occ;
int polyploidy;
int trio_flag_occ_thres;
} hifiasm_opt_t;