backup r321

partig.h

@@ -0,0 +1,51 @@
+#ifndef __PURTIG__
+#define __PURTIG__
+#include <stdio.h>
+#include <stdint.h>
+#include "kvec.h"
+#include "Overlaps.h"
+#include "Purge_Dups.h"
+
+typedef struct {
+    uint32_t bS, bE;
+    uint32_t nS, nE;
+    uint32_t uID;
+    uint8_t hs;
+}pt_node_t;
+
+typedef struct {
+	///sid[0]: query id
+	///sid[1]: target id
+	uint32_t sid[2];
+	uint32_t w;
+} pt_match1_t;
+
+typedef struct {
+    kvec_t(uint64_t) idx;
+    kvec_t(pt_match1_t) ma;
+    uint64_t* cc;
+    uint32_t n_seq;
+} pt_match_t;
+
+typedef struct {
+	///cnt1: how many unique minimizers
+	///cnt2: how many non-unique minimizers
+	///uint32_t cnt2, cnt1;
+	uint64_t m[2];
+	int8_t s;
+} pt_uinfo_t;
+
+typedef struct {
+    kvec_t(pt_node_t) p;
+    ma_ug_t *ug;
+    asg_t *rg;
+    trans_chain* t_ch;
+    ///kvec_t(int8_t) s; ///status
+    kvec_t(pt_uinfo_t) info; ///status
+    kvec_t(uint32_t) p_idx;
+    pt_match_t* e;
+}pt_g_t;
+
+void pt_solve(hap_overlaps_list* ovlp, trans_chain* t_ch, ma_ug_t *ug, asg_t *read_g, double f_rate, uint8_t* trio_flag);
+
+#endif