diff --git a/CommandLines.h b/CommandLines.h
index d214057..4f828c8 100644
--- a/CommandLines.h
+++ b/CommandLines.h
@@ -3,7 +3,7 @@
 
 #include <pthread.h>
 
-#define HA_VERSION "0.3.0-dirty-r198"
+#define HA_VERSION "0.3.0-dirty-r199"
 
 #define VERBOSE 0
 
diff --git a/Makefile b/Makefile
index a0cff56..03a513e 100644
--- a/Makefile
+++ b/Makefile
@@ -31,3 +31,35 @@ depend:
 		(LC_ALL=C; export LC_ALL; makedepend -Y -- $(CPPFLAGS) $(DFLAGS) -- *.cpp)
 
 # DO NOT DELETE
+
+Assembly.o: Assembly.h CommandLines.h Process_Read.h Overlaps.h kvec.h kdq.h
+Assembly.o: Hash_Table.h htab.h POA.h Correct.h Levenshtein_distance.h
+Assembly.o: Output.h
+CommandLines.o: CommandLines.h ketopt.h
+Correct.o: Correct.h Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h
+Correct.o: kdq.h CommandLines.h Levenshtein_distance.h POA.h Assembly.h
+Hash_Table.o: Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h kdq.h
+Hash_Table.o: CommandLines.h Correct.h Levenshtein_distance.h POA.h ksort.h
+Levenshtein_distance.o: Levenshtein_distance.h
+Output.o: Output.h CommandLines.h
+Overlaps.o: Overlaps.h kvec.h kdq.h ksort.h Process_Read.h CommandLines.h
+Overlaps.o: Hash_Table.h htab.h Correct.h Levenshtein_distance.h POA.h
+Overlaps.o: Purge_Dups.h
+POA.o: POA.h Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h kdq.h
+POA.o: CommandLines.h Correct.h Levenshtein_distance.h
+Process_Read.o: Process_Read.h Overlaps.h kvec.h kdq.h CommandLines.h
+Purge_Dups.o: ksort.h Purge_Dups.h kvec.h kdq.h Overlaps.h Hash_Table.h
+Purge_Dups.o: htab.h Process_Read.h CommandLines.h Correct.h
+Purge_Dups.o: Levenshtein_distance.h POA.h
+Trio.o: khashl.h kthread.h Process_Read.h Overlaps.h kvec.h kdq.h
+Trio.o: CommandLines.h htab.h
+anchor.o: htab.h Process_Read.h Overlaps.h kvec.h kdq.h CommandLines.h
+anchor.o: ksort.h Hash_Table.h
+hist.o: htab.h Process_Read.h Overlaps.h kvec.h kdq.h CommandLines.h
+htab.o: kthread.h khashl.h kseq.h ksort.h htab.h Process_Read.h Overlaps.h
+htab.o: kvec.h kdq.h CommandLines.h
+kthread.o: kthread.h
+main.o: CommandLines.h Process_Read.h Overlaps.h kvec.h kdq.h Assembly.h
+main.o: Levenshtein_distance.h htab.h
+sketch.o: kvec.h htab.h Process_Read.h Overlaps.h kdq.h CommandLines.h
+sys.o: htab.h Process_Read.h Overlaps.h kvec.h kdq.h CommandLines.h
diff --git a/Overlaps.cpp b/Overlaps.cpp
index 42c38bd..cadd74b 100644
--- a/Overlaps.cpp
+++ b/Overlaps.cpp
@@ -13688,26 +13688,25 @@ void write_ma_hit_ts(ma_hit_t_alloc* x, long long n_read, char* read_file_name)
     fprintf(stderr, "ma_hit_ts has been written.\n");
 }
 
-void write_all_data_to_disk(ma_hit_t_alloc* sources, ma_hit_t_alloc* reverse_sources, 
-All_reads *RNF, char* output_file_name)
+void write_all_data_to_disk(ma_hit_t_alloc* sources, ma_hit_t_alloc* reverse_sources, All_reads *RNF, char* output_file_name)
 {   
-    char* gfa_name = (char*)malloc(strlen(output_file_name)+25);
-    sprintf(gfa_name, "%s.ovlp", output_file_name);
-    write_All_reads(RNF, gfa_name);
-    
-    sprintf(gfa_name, "%s.ovlp.source", output_file_name);
-    write_ma_hit_ts(sources, RNF->total_reads, gfa_name);
+	char* gfa_name = (char*)malloc(strlen(output_file_name)+25);
+	sprintf(gfa_name, "%s.ec", output_file_name);
+	write_All_reads(RNF, gfa_name);
 
-    sprintf(gfa_name, "%s.ovlp.reverse", output_file_name);
-    write_ma_hit_ts(reverse_sources, RNF->total_reads, gfa_name);
+	sprintf(gfa_name, "%s.ovlp.source", output_file_name);
+	write_ma_hit_ts(sources, RNF->total_reads, gfa_name);
 
-    free(gfa_name);
+	sprintf(gfa_name, "%s.ovlp.reverse", output_file_name);
+	write_ma_hit_ts(reverse_sources, RNF->total_reads, gfa_name);
+
+	free(gfa_name);
 }
 
 int load_all_data_from_disk(ma_hit_t_alloc **sources, ma_hit_t_alloc **reverse_sources, char* output_file_name)
 {
 	char* gfa_name = (char*)malloc(strlen(output_file_name)+25);
-	sprintf(gfa_name, "%s.ovlp", output_file_name);
+	sprintf(gfa_name, "%s.ec", output_file_name);
 	if (!load_All_reads(&R_INF, gfa_name)) {
 		free(gfa_name);
 		return 0;