xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-30 10:08:11 +08:00
Code Issues Packages Projects Releases Wiki Activity

update readme for ont

Browse Source
This commit is contained in:
chhylp123
2025-01-31 20:27:22 -05:00
parent 2c77b3c87e
commit 4733ef5011
4 changed files with 65 additions and 5 deletions
Download Patch File Download Diff File Expand all files Collapse all files
htab.cpp
+11 -1
View File
@@ -991,8 +991,18 @@ ha_ct_t *ha_count(const hifiasm_opt_t *asm_o, int flag, int HPC, int k, int w, h
opt.adaLen = (keep_adapter? asm_o->adapterLen : 0);
opt.min_rcnt = (low_freq?*low_freq:-1);
opt.uq = (unique_only?1:0);
n_bs = 0;
///pending for integration
/**
if(rs && asm_o->ar && asm_o->ul_mod) {
for (i = 0; i < asm_o->ar->n; ++i){
h = yak_count(&opt, asm_o->ar->a[i], flag|HAF_CREATE_NEW, p0, h, flt_tab, rs, us, &n_seq);
if(h) n_bs += h->bs;
}
}**/
///asm_opt->num_reads is the number of fastq files
for (i = n_bs = 0; i < (us?1:asm_o->num_reads); ++i){
for (i = 0; i < (us?1:asm_o->num_reads); ++i){
h = yak_count(&opt, asm_o->read_file_names[i], flag|HAF_CREATE_NEW, p0, h, flt_tab, rs, us, &n_seq);
if(h) n_bs += h->bs;
}