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bug fixed

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chhylp123
2021-04-17 00:31:19 -04:00
parent efacf8e796
commit 4bc43cec92
3 changed files with 88 additions and 42 deletions
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hic.cpp
+4 -4
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@@ -7406,7 +7406,7 @@ void update_bsg(asg_t *bsg, kvec_asg_arc_t_warp* edges)
void resolve_bubble_chain_tangle(ma_ug_t* ug, bubble_type* bub)
{
double index_time = yak_realtime();
// double index_time = yak_realtime();
ma_ug_t *bub_ug = bub->b_ug;
asg_t *bsg = bub->b_g;
uint32_t k, i, v, n_vx, new_bub;
@@ -7575,7 +7575,7 @@ void resolve_bubble_chain_tangle(ma_ug_t* ug, bubble_type* bub)
kv_destroy(res_btg.a); kv_destroy(res_utg.a); kv_destroy(edges.a);
///print_debug_bubble_graph(bub, ug, asm_opt.output_file_name);
fprintf(stderr, "[M::%s::%.3f]\n", __func__, yak_realtime()-index_time);
// fprintf(stderr, "[M::%s::%.3f]\n", __func__, yak_realtime()-index_time);
}
void update_bubble_chain(ma_ug_t* ug, bubble_type* bub, uint32_t is_middle, uint32_t is_end)
@@ -13931,11 +13931,11 @@ int hic_short_align(const enzyme *fn1, const enzyme *fn2, ha_ug_index* idx)
}
renew_kv_u_trans(&k_trans, &link, &sl.hits, &(idx->t_ch->k_trans), idx, &bub, s->s, 0);
// if(bub.round_id == 0) init_phase(idx, &k_trans, &bub, s);
if(bub.round_id == 0) init_phase(idx, &k_trans, &bub, s);
update_trans_g(idx, &k_trans, &bub);
/*******************************for debug************************************/
mc_solve(NULL, NULL, &k_trans, idx->ug, idx->read_g, 0.8, R_INF.trio_flag,
(bub.round_id == 0? 1 : 0), s->s, 0, /**&bub**/NULL);
/**(bub.round_id == 0? 1 : 0)**/0, s->s, 0, /**&bub**/NULL);
/*******************************for debug************************************/
label_unitigs_sm(s->s, idx->ug);
/**