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fix bug for gen_contain_consensus_chain

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chhylp123
2023-10-22 13:23:27 -04:00
parent 281ae6ba89
commit 4ca8951f9d
12 changed files with 281 additions and 54 deletions
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htab.cpp
+3 -3
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@@ -1096,14 +1096,14 @@ void *ha_ft_ug_gen(const hifiasm_opt_t *asm_opt, ma_utg_v *us, int is_HPC, int k
return (void*)flt_tab;
}
void *ha_ft_gen(const hifiasm_opt_t *asm_opt, All_reads *rs, int *hom_cov, int is_hp_mode)
void *ha_ft_gen(const hifiasm_opt_t *asm_opt, All_reads *rs, int *hom_cov, int is_hp_mode, int read_from_store)
{
yak_ft_t *flt_tab;
int64_t cnt[YAK_N_COUNTS];
int peak_hom, peak_het, cutoff = YAK_MAX_COUNT - 1, ex_flag = 0;
if(is_hp_mode) ex_flag = HAF_RS_READ|HAF_SKIP_READ;
ha_ct_t *h;
h = ha_count(asm_opt, HAF_COUNT_ALL|HAF_RS_WRITE_LEN|ex_flag, !(asm_opt->flag&HA_F_NO_HPC), asm_opt->k_mer_length, asm_opt->mz_win, NULL, NULL, rs, NULL, 1, NULL, 0);
ha_ct_t *h;
h = ha_count(asm_opt, HAF_COUNT_ALL|ex_flag|((read_from_store)?(HAF_RS_READ):(HAF_RS_WRITE_LEN)), !(asm_opt->flag&HA_F_NO_HPC), asm_opt->k_mer_length, asm_opt->mz_win, NULL, NULL, rs, NULL, 1, NULL, 0);
if((asm_opt->flag & HA_F_VERBOSE_GFA))
{
write_ct_index((void*)h, asm_opt->output_file_name);