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fix bug for gen_contain_consensus_chain

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chhylp123
2023-10-22 13:23:27 -04:00
parent 281ae6ba89
commit 4ca8951f9d
12 changed files with 281 additions and 54 deletions
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4
inter.cpp
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@@ -18178,7 +18178,9 @@ const ug_opt_t *uopt, const asg_t *rg, R_to_U *ri, int64_t bw, double diff_ec_ul
{
uint64_t dn = dump->n, i, mqs, mqe; int64_t iqs, iqe, its, ite; idx->n = 0;
collect_nc_ovlps(rch, rch_i, idx, uopt, rg, ri, ulid, &mqs, &mqe);
assert(idx->n > 1); assert((mqs != ((uint64_t)-1)) && (mqe != ((uint64_t)-1)) && (mqe > mqs));
// assert(idx->n > 1); assert((mqs != ((uint64_t)-1)) && (mqe != ((uint64_t)-1)) && (mqe > mqs));
if((idx->n <= 1) || (mqs == ((uint64_t)-1)) || (mqe == ((uint64_t)-1)) || (mqe <= mqs)) return;
gen_linear_rchains(idx, dump, rg, uopt, bw, diff_ec_ul, rch->rlen, dp, ulid);
assert(idx->n);
idx->n = gen_cns_chain_linear(idx->a, idx->n, /**dump->a+dn,**/ rg, ri, rch->rlen, bw, diff_ec_ul, dp, UG_SKIP_N, UG_ITER_N, UG_DIS_N, mqs, mqe, ulid);