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r226b: prefer unique anchors

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Heng Li
2020-04-11 22:28:21 -04:00
parent c4397a9400
commit 4d7600361c
5 changed files with 21 additions and 7 deletions
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2
CommandLines.cpp
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@@ -75,6 +75,7 @@ void init_opt(hifiasm_opt_t* asm_opt)
asm_opt->mz_win = 51;
asm_opt->bf_shift = 37;
asm_opt->high_factor = 5.0f;
asm_opt->hom_cov = 20;
asm_opt->max_n_chain = 100;
asm_opt->k_mer_min_freq = 3;
asm_opt->k_mer_max_freq = 66;
@@ -117,6 +118,7 @@ void ha_opt_reset_to_round(hifiasm_opt_t* asm_opt, int round)
void ha_opt_update_cov(hifiasm_opt_t *opt, int hom_cov)
{
int max_n_chain = (int)(hom_cov * opt->high_factor + .499);
opt->hom_cov = hom_cov;
if (opt->max_n_chain < max_n_chain)
opt->max_n_chain = max_n_chain;
fprintf(stderr, "[M::%s] updated max_n_chain to %d\n", __func__, opt->max_n_chain);