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r226b: prefer unique anchors

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Heng Li
2020-04-11 22:28:21 -04:00
parent c4397a9400
commit 4d7600361c
5 changed files with 21 additions and 7 deletions
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CommandLines.h
+2 -1
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@@ -3,7 +3,7 @@
#include <pthread.h>
#define HA_VERSION "0.3.0-dirty-r226"
#define HA_VERSION "0.3.0-dirty-r226b"
#define VERBOSE 0
@@ -27,6 +27,7 @@ typedef struct {
int mz_win;
int bf_shift;
float high_factor; // coverage cutoff set to high_factor*hom_cov
int hom_cov;
int max_n_chain; // fall-back max number of chains to consider
int k_mer_min_freq;
int k_mer_max_freq;