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This commit is contained in:
Haoyu Cheng
2019-07-09 15:11:04 -04:00
parent 1892b4d2db
commit 4eddb02dbd
5 changed files with 560 additions and 66 deletions
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Hash_Table.h
+8
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@@ -41,6 +41,7 @@ typedef struct
{
k_mer_pos* list;
uint64_t length;
uint64_t size;
uint8_t direction;
uint64_t end_pos;
} k_mer_pos_list;
@@ -65,6 +66,7 @@ typedef struct
uint64_t y_pos_strand;
uint64_t shared_seed;
uint64_t align_length;
} overlap_region;
@@ -387,6 +389,9 @@ void destory_k_mer_pos_list_alloc(k_mer_pos_list_alloc* list);
void clear_k_mer_pos_list_alloc(k_mer_pos_list_alloc* list);
void append_k_mer_pos_list_alloc(k_mer_pos_list_alloc* list, k_mer_pos* n_list, uint64_t n_length,
uint64_t n_end_pos, uint8_t n_direction);
void merge_k_mer_pos_list_alloc(k_mer_pos_list_alloc* list, Candidates_list* candidates);
void merge_k_mer_pos_list_alloc_heap_sort(k_mer_pos_list_alloc* list, Candidates_list* candidates, HeapSq* HBT);
void merge_k_mer_pos_list_alloc_heap_sort_advance(k_mer_pos_list_alloc* list, Candidates_list* candidates, HeapSq* HBT);
@@ -443,6 +448,9 @@ uint64_t readID, uint64_t readLength, All_reads* R_INF);