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init partition

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chhylp123
2020-12-26 19:01:24 -05:00
parent f3e390eee8
commit 53a655d802
7 changed files with 1887 additions and 183 deletions
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CommandLines.cpp
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@@ -136,7 +136,9 @@ void init_opt(hifiasm_opt_t* asm_opt)
asm_opt->purge_level_primary = 2;
asm_opt->purge_level_trio = 0;
asm_opt->purge_simi_rate = 0.75;
asm_opt->purge_simi_rate_hic = 0.85;
asm_opt->purge_overlap_len = 1;
asm_opt->purge_overlap_len_hic = 50;
asm_opt->recover_atg_cov_min = -1024;
asm_opt->recover_atg_cov_max = INT_MAX;
asm_opt->hom_global_coverage = -1;