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init partition

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chhylp123
2020-12-26 19:01:24 -05:00
parent f3e390eee8
commit 53a655d802
7 changed files with 1887 additions and 183 deletions
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hic.h
+6 -1
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@@ -3,7 +3,12 @@
#include <stdint.h>
#include "Overlaps.h"
#define kdq_clear(q) ((q)->count = (q)->front = 0)
#define kv_malloc(v, s) ((v).n = 0, (v).m = (s), MALLOC((v).a, (s)))
hc_edge* get_hc_edge(hc_links* link, uint64_t src, uint64_t dest, uint64_t dir);
void push_hc_edge(hc_linkeage* x, uint64_t uID, int weight, int dir, uint64_t* d);
void hic_analysis(ma_ug_t *ug);
void hic_analysis(ma_ug_t *ug, asg_t* read_g, hc_links* link);
void hic_benchmark(ma_ug_t *ug, asg_t* read_g);
#endif