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Merge branch 'master' into dev-lh3

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Heng Li
2020-04-11 00:08:35 -04:00
parent c710c6ea48 20c6c1d2e6
commit 54fa1a9aed
3 changed files with 17 additions and 31 deletions
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Assembly.cpp
+2 -1
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@@ -1156,7 +1156,8 @@ int ha_assemble(void)
if (asm_opt.load_index_from_disk && load_all_data_from_disk(&R_INF.paf, &R_INF.reverse_paf, asm_opt.output_file_name)) {
ovlp_loaded = 1;
fprintf(stderr, "[M::%s::%.3f*%.2f] ==> loaded corrected reads and overlaps from disk\n", __func__, yak_realtime(), yak_cpu_usage());
if (!(asm_opt.flag & HA_F_SKIP_TRIOBIN)) ha_triobin(&asm_opt);
//if (!(asm_opt.flag & HA_F_SKIP_TRIOBIN)) ha_triobin(&asm_opt);
if (!(asm_opt.flag & HA_F_SKIP_TRIOBIN)&&!(asm_opt.flag&HA_F_VERBOSE_GFA)) ha_triobin(&asm_opt);
if (asm_opt.flag & HA_F_WRITE_EC) Output_corrected_reads();
if (asm_opt.flag & HA_F_WRITE_PAF) Output_PAF();
}