diff --git a/Assembly.cpp b/Assembly.cpp index 48ae9c5..f22c685 100644 --- a/Assembly.cpp +++ b/Assembly.cpp @@ -584,6 +584,8 @@ static void worker_ovec(void *data, long i, int tid) R_INF.paf[i].is_abnormal = abnormal; R_INF.trio_flag[i] = AMBIGU; + + ///need to be fixed in r305 // if(ha_idx_hp == NULL) // { // R_INF.trio_flag[i] += collect_hp_regions(&b->olist, &R_INF, &(b->k_flag), RESEED_HP_RATE, Get_READ_LENGTH(R_INF, i), NULL); @@ -682,6 +684,8 @@ static void worker_ovec_related_reads(void *data, long i, int tid) } R_INF.trio_flag[i] = AMBIGU; + + ///need to be fixed in r305 // if(ha_idx_hp == NULL) // { // R_INF.trio_flag[i] += collect_hp_regions(&b->olist, &R_INF, &(b->k_flag), RESEED_HP_RATE, Get_READ_LENGTH(R_INF, i), R_INF_FLAG.fp);