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r342-misjoin

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chhylp123
2021-06-19 14:09:09 -04:00
parent e3b721c29a
commit 5a400af39d
9 changed files with 845 additions and 22 deletions
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Overlaps.h
+6
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@@ -994,6 +994,12 @@ uint64_t get_utg_cov(ma_ug_t *ug, uint32_t uID, asg_t* read_g,
const ma_sub_t* coverage_cut, ma_hit_t_alloc* sources, R_to_U* ruIndex, uint8_t* r_flag);
trans_chain* load_hc_trans(const char *fn);
char *get_outfile_name(char* output_file_name);
void reset_u_trans_hit_idx(u_trans_hit_idx *t, uint32_t* i_x_a, uint32_t i_x_n, ma_ug_t *i_ug,
asg_t *i_read_sg, trans_chain* i_t_ch, uint32_t i_cBeg, uint32_t i_cEnd);
void extract_sub_overlaps(uint32_t i_tScur, uint32_t i_tEcur, uint32_t i_tSpre, uint32_t i_tEpre,
uint32_t tn, kv_u_trans_hit_t* ktb, uint32_t bn);
void clean_u_trans_t_idx(kv_u_trans_t *ta, ma_ug_t *ug, asg_t *read_g);
#define JUNK_COV 5
#define DISCARD_RATE 0.8