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fix missed ug when bubble popping

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chhylp123
2021-05-19 10:16:23 -04:00
parent b12e008416
commit 5c1680e998
2 changed files with 6 additions and 107 deletions
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hic.cpp
+2 -2
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@@ -2344,7 +2344,7 @@ void identify_bubbles(ma_ug_t* ug, bubble_type* bub, uint8_t *r_het_flag, kv_u_t
for (v = 0; v < n_vtx; ++v)
{
if((bub->index[v]&(uint32_t)3) !=2) continue;
if(asg_bub_pop1_primary_trio(ug->g, NULL, v, tLen, &b, (uint32_t)-1, (uint32_t)-1, 0, &pathLen, NULL, NULL, 0, 0))
if(asg_bub_pop1_primary_trio(ug->g, ug, v, tLen, &b, (uint32_t)-1, (uint32_t)-1, 0, &pathLen, NULL, NULL, 0, 0))
{
//note b.b include end, does not include beg
i = b.b.n + 1;
@@ -2376,7 +2376,7 @@ void identify_bubbles(ma_ug_t* ug, bubble_type* bub, uint8_t *r_het_flag, kv_u_t
if((bub->num.a[k]>>31) == 0) bub->s_bub++;
v = (bub->num.a[k]<<1)>>1;
bub->num.a[k] = bub->list.n;
if(asg_bub_pop1_primary_trio(ug->g, NULL, v, tLen, &b, (uint32_t)-1, (uint32_t)-1, 0, &pathLen, NULL, NULL, 0, 0))
if(asg_bub_pop1_primary_trio(ug->g, ug, v, tLen, &b, (uint32_t)-1, (uint32_t)-1, 0, &pathLen, NULL, NULL, 0, 0))
{
kv_push(uint64_t, bub->pathLen, pathLen);
//beg is v, end is b.S.a[0]