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extend ed alignment

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chhylp123
2022-09-13 17:29:27 -04:00
parent ee51a6dddc
commit 5da05f308f
11 changed files with 2348 additions and 111 deletions
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4
Hash_Table.cpp
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@@ -1441,7 +1441,7 @@ uint64_t lchain_dp_fciagr(k_mer_hit* a, int64_t a_n, k_mer_hit* des, Chain_Data*
if (max_ii < 0 || ((int64_t)a[i].offset) - ((int64_t)a[max_ii].offset) > max_dis) {
max = INT32_MIN; max_ii = -1;
for (j = i - 1; j >= st; --j) {
for (j = i - 1; (j >= st) && ((((int64_t)a[i].offset)-((int64_t)a[j].offset))<=max_dis); --j) {
if (max < f[j]) {
max = f[j], max_ii = j;
}
@@ -1581,7 +1581,7 @@ uint64_t lchain_dp(k_mer_hit* a, int64_t a_n, k_mer_hit* des, Chain_Data* dp, ov
if (max_ii < 0 || ((int64_t)a[i].offset) - ((int64_t)a[max_ii].offset) > max_dis) {
max = INT32_MIN; max_ii = -1;
for (j = i - 1; j >= st; --j) {
for (j = i - 1; (j >= st) && ((((int64_t)a[i].offset)-((int64_t)a[j].offset))<=max_dis); --j) {
if (max < f[j]) {
max = f[j], max_ii = j;
}