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option to skip k-mer filtering

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Heng Li
2020-03-27 22:32:39 -04:00
parent 19648873b9
commit 5e16483b43
4 changed files with 29 additions and 9 deletions
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main.cpp
+2 -1
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@@ -12,7 +12,8 @@ int main(int argc, char *argv[])
init_opt(&asm_opt);
if (!CommandLine_process(argc, argv, &asm_opt)) return 1;
yak_reset_realtime();
ha_flt_tab = ha_ft_gen(&asm_opt, &R_INF);
if (!asm_opt.no_kmer_flt)
ha_flt_tab = ha_ft_gen(&asm_opt, &R_INF);
Correct_Reads(asm_opt.number_of_round);
ha_ft_destroy(ha_flt_tab);
destory_All_reads(&R_INF);