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debug uc_block_t

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This commit is contained in:
chhylp123
2022-03-21 22:00:30 -04:00
parent d3b9de4120
commit 60236cd967
5 changed files with 1134 additions and 177 deletions
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Process_Read.h
+7 -3
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@@ -159,8 +159,9 @@ typedef struct
typedef struct
{
uint32_t hid:31, rev:1;
uint32_t hid;
uint32_t qs, qe, ts, te;
uint8_t pchain:6, rev:1, base:1;
} uc_block_t;
typedef struct
@@ -177,10 +178,12 @@ typedef struct
typedef struct
{
kvec_t(uint8_t) r_base;
uint32_t rlen;
uint32_t rlen;
kvec_t(uc_block_t) bb;
N_t N_site;
uint8_t h;
} ul_vec_t;
typedef struct{
@@ -195,7 +198,7 @@ typedef struct
ul_vec_t *a;
size_t n, m;
All_reads *hR;
uint32_t mm;
// uint32_t mm;
} all_ul_t;
extern all_ul_t UL_INF;
@@ -227,5 +230,6 @@ void retrieve_u_seq(UC_Read* i_r, char* i_s, ma_utg_t *u, uint8_t strand, int64_
void debug_retrieve_rc_sub(const ug_opt_t *uopt, all_ul_t *ref, const All_reads *R_INF, ul_idx_t *ul, uint32_t n_step);
uint32_t retrieve_u_cov(const ul_idx_t *ul, uint64_t id, uint8_t strand, uint64_t pos, uint8_t dir, int64_t *pi);
uint64_t retrieve_u_cov_region(const ul_idx_t *ul, uint64_t id, uint8_t strand, uint64_t s, uint64_t e, int64_t *pi);
uint64_t retrieve_r_cov_region(const ul_idx_t *ul, uint64_t id, uint8_t strand, uint64_t s, uint64_t e, int64_t *pi);
#endif