xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-15 12:47:57 +08:00
Code Issues Packages Projects Releases Wiki Activity

update for 0.2.0

Browse Source
This commit is contained in:
chhylp123
2020-02-07 14:52:14 -05:00
parent 6edf54048c
commit 6246132702
7 changed files with 6126 additions and 686 deletions
Download Patch File Download Diff File Expand all files Collapse all files

12
Correct.cpp
View File

@@ -5024,7 +5024,8 @@ long long xBeg, long long xEnd, long long flag_offset)
for (i = 0; i < operationLen; i++)
{
/// note we need to deal with flag_offset carefully
if(flag[x_i - flag_offset] < 127 && x_i >= xBeg && x_i <= xEnd)
///if(flag[x_i - flag_offset] < 127 && x_i >= xBeg && x_i <= xEnd)
if(x_i >= xBeg && x_i <= xEnd && flag[x_i - flag_offset] < 127)
{
flag[x_i - flag_offset]++;
}
@@ -5275,7 +5276,8 @@ haplotype_evdience_alloc* hap, long long snp_threshold)
{
///should be at least 2 mismatches
/// note we need to deal with flag_offset carefully
if(flag[x_i - flag_offset] > snp_threshold && x_i >= xBeg && x_i <= xEnd)
///if(flag[x_i - flag_offset] > snp_threshold && x_i >= xBeg && x_i <= xEnd)
if(x_i >= xBeg && x_i <= xEnd && flag[x_i - flag_offset] > snp_threshold)
{
ev.misBase = y_string[y_i];
ev.overlapID = overlapID;
@@ -5296,7 +5298,8 @@ haplotype_evdience_alloc* hap, long long snp_threshold)
/// should be at least 2 mismatches
/// note we need to deal with flag_offset carefully
if(flag[x_i - flag_offset] > snp_threshold && x_i >= xBeg && x_i <= xEnd)
///if(flag[x_i - flag_offset] > snp_threshold && x_i >= xBeg && x_i <= xEnd)
if(x_i >= xBeg && x_i <= xEnd && flag[x_i - flag_offset] > snp_threshold)
{
ev.misBase = y_string[y_i];
ev.overlapID = overlapID;
@@ -5323,7 +5326,8 @@ haplotype_evdience_alloc* hap, long long snp_threshold)
///if(hap->flag[inner_offset] > snp_threshold)
/// should be at least 2 mismatches
/// note we need to deal with flag_offset carefully
if(flag[x_i - flag_offset] > snp_threshold && x_i >= xBeg && x_i <= xEnd)
///if(flag[x_i - flag_offset] > snp_threshold && x_i >= xBeg && x_i <= xEnd)
if(x_i >= xBeg && x_i <= xEnd && flag[x_i - flag_offset] > snp_threshold)
{
ev.misBase = 'N';
ev.overlapID = overlapID;