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complex cleaning

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chhylp123
2021-05-20 17:03:18 -04:00
parent 5c1680e998
commit 626787ab8a
3 changed files with 509 additions and 11 deletions
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hic.h
+12
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@@ -68,6 +68,14 @@ typedef struct {
uint64_t pos_mode;
} kvec_pe_hit;
typedef struct{
kvec_t(uint8_t) vis;
kvec_t(uint64_t) x;
kvec_t(uint64_t) dis;
uint64_t uID_mode, uID_shift, tmp_v, tmp_d;
}pdq;
#define P_het(B) ((B).num.n)
#define M_het(B) ((B).num.n + 1)
// #define IF_BUB(ID, B) ((B).index[(ID)] < (B).num.n)
@@ -91,5 +99,9 @@ void debug_gfa_space(ma_ug_t* ug, hap_cov_t *cov);
void init_ug_idx(ma_ug_t *ug, uint64_t k, uint64_t up_bound, uint64_t low_bound, uint64_t build_idx);
void des_ug_idx();
uint64_t count_unique_k_mers(char *r, uint64_t len, uint64_t query, uint64_t target, uint64_t *all, uint64_t *found);
void init_pdq(pdq* q, uint64_t utg_num);
void destory_pdq(pdq* q);
uint32_t check_trans_relation_by_path(uint32_t v, uint32_t w, pdq* pqv, pdq* pqw,
asg_t *sg, uint8_t *dest, uint8_t df, uint32_t df_occ, uint32_t* pre, double rate);
#endif