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update 0.15.5

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chhylp123
2021-07-22 00:59:52 -04:00
parent a531a4cbda
commit 62b7418257
16 changed files with 1146 additions and 68 deletions
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hic.h
+1 -1
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@@ -11,7 +11,6 @@
hc_edge* get_hc_edge(hc_links* link, uint64_t src, uint64_t dest, uint64_t dir);
hc_edge* push_hc_edge(hc_linkeage* x, uint64_t uID, double weight, int dir, uint64_t* d);
void hic_analysis(ma_ug_t *ug, asg_t* read_g, trans_chain* t_ch, ug_opt_t *opt, uint32_t is_poy);
void hic_benchmark(ma_ug_t *ug, asg_t* read_g);
typedef struct {
@@ -106,5 +105,6 @@ pdq* pqw, uint32_t* path_w, buf_t *resw, asg_t *sg, uint8_t *dest, uint8_t df, u
long long *dis);
void set_utg_by_dis(uint32_t v, pdq* pq, asg_t *g, kvec_t_u32_warp *res, uint32_t dis);
void dedup_hits(kvec_pe_hit* hits, uint64_t is_dup);
void hic_analysis(ma_ug_t *ug, asg_t* read_g, trans_chain* t_ch, ug_opt_t *opt, uint32_t is_poy, kvec_pe_hit **rhits);
#endif