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update 0.15.5

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chhylp123
2021-07-22 00:59:52 -04:00
parent a531a4cbda
commit 62b7418257
16 changed files with 1146 additions and 68 deletions
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horder.h
+6
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@@ -48,6 +48,8 @@ typedef struct {
}scg_t;
typedef struct {
kvec_t(uint64_t) avoid;
// kvec_t(uint64_t) occ;
// kvec_t(uint8_t) hf;
kvec_pe_hit r_hits, u_hits;
ma_ug_t *ug;
asg_t *r_g;
@@ -61,4 +63,8 @@ void horder_clean_sg_by_utg(asg_t *sg, ma_ug_t *ug);
kvec_pe_hit *get_r_hits_for_trio(kvec_pe_hit *u_hits, asg_t* r_g, ma_ug_t* ug, bubble_type* bub, uint64_t uID_bits, uint64_t pos_mode);
void update_switch_unitig(ma_ug_t *ug, asg_t *rg, kvec_pe_hit *hits, kv_u_trans_t *k_trans, uint64_t cutoff_s, uint64_t cutoff_e,
uint64_t min_ulen, double boundaryRate);
kvec_pe_hit *get_r_hits_order(kvec_pe_hit *uhits, uint64_t hits_uid_bits, uint64_t hits_pos_mode,
asg_t *rg, ma_ug_t* ug, bubble_type* bub);
void ha_aware_order(kvec_pe_hit *r_hits, asg_t *rg, ma_ug_t *ug_fa, ma_ug_t *ug_mo, kv_u_trans_t *ref,
ug_opt_t *opt, uint32_t round);
#endif