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update README

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chhylp123
2021-07-22 01:16:28 -04:00
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README.md
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@@ -23,6 +23,7 @@ yak count -b37 -t16 -o pat.yak <(cat pat_1.fq.gz pat_2.fq.gz) <(cat pat_1.fq.gz
yak count -b37 -t16 -o mat.yak <(cat mat_1.fq.gz mat_2.fq.gz) <(cat mat_1.fq.gz mat_2.fq.gz) yak count -b37 -t16 -o mat.yak <(cat mat_1.fq.gz mat_2.fq.gz) <(cat mat_1.fq.gz mat_2.fq.gz)
hifiasm -o HG002.asm -t32 -1 pat.yak -2 mat.yak HG002-HiFi.fa.gz hifiasm -o HG002.asm -t32 -1 pat.yak -2 mat.yak HG002-HiFi.fa.gz
``` ```
See [tutorial][tutorial] for more details.
## Table of Contents ## Table of Contents
@@ -224,10 +225,11 @@ non-human ones are available [here][zenodo-nonh].
[gfa]: https://github.com/pmelsted/GFA-spec/blob/master/GFA-spec.md [gfa]: https://github.com/pmelsted/GFA-spec/blob/master/GFA-spec.md
[paf]: https://github.com/lh3/miniasm/blob/master/PAF.md [paf]: https://github.com/lh3/miniasm/blob/master/PAF.md
[yak]: https://github.com/lh3/yak [yak]: https://github.com/lh3/yak
[tutorial]: https://hifiasm.readthedocs.io/en/latest/index.html
## <a name="help"></a>Getting Help ## <a name="help"></a>Getting Help
For detailed description of options, please see `man ./hifiasm.1`. The `-h` For detailed description of options, please see [tutorial][tutorial] or `man ./hifiasm.1`. The `-h`
option of hifiasm also provides brief description of options. If you have option of hifiasm also provides brief description of options. If you have
further questions, please raise an issue at the [issue further questions, please raise an issue at the [issue
page](https://github.com/chhylp123/hifiasm/issues). page](https://github.com/chhylp123/hifiasm/issues).