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update before fly HPC

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chhylp123
2024-10-29 14:59:52 -04:00
parent ade800990e
commit 6de4e14782
7 changed files with 363 additions and 143 deletions
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5
CommandLines.cpp
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@@ -911,8 +911,9 @@ int CommandLine_process(int argc, char *argv[], hifiasm_opt_t* asm_opt)
else if (c == 356) asm_opt->telo_drop = atol(opt.arg);
else if (c == 357) asm_opt->telo_mic_sc = atol(opt.arg);
else if (c == 358) asm_opt->max_contig_tip = atol(opt.arg);
else if (c == 359) asm_opt->is_ont = 1;
else if (c == 'l') { ///0: disable purge_dup; 1: purge containment; 2: purge overlap
else if (c == 359) {
asm_opt->is_ont = 1; asm_opt->max_ov_diff_ec = 0.07;
} else if (c == 'l') { ///0: disable purge_dup; 1: purge containment; 2: purge overlap
asm_opt->purge_level_primary = asm_opt->purge_level_trio = atoi(opt.arg);
}
else if (c == 's') asm_opt->purge_simi_rate_l2 = asm_opt->purge_simi_rate_l3 = atof(opt.arg);