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keeping more telomeres

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chhylp123
2024-05-06 04:02:20 -04:00
parent 73dd5eeb5b
commit 70fd9a0b1f
6 changed files with 570 additions and 117 deletions
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CommandLines.h
+7 -1
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@@ -5,7 +5,7 @@
#include <pthread.h>
#include <stdint.h>
#define HA_VERSION "0.19.9-r606"
#define HA_VERSION "0.19.9-r616"
#define VERBOSE 0
@@ -83,6 +83,7 @@ typedef struct {
int min_overlap_coverage;
int max_short_tip;
int max_short_ul_tip;
int max_contig_tip;
int min_cnt;
int mid_cnt;
int purge_level_primary;
@@ -153,6 +154,11 @@ typedef struct {
uint64_t self_scaf_reliable_min;
int64_t self_scaf_gap_max;
int64_t somatic_cov;
char *telo_motif;
int64_t telo_pen;
int64_t telo_drop;
int64_t telo_mic_sc;
} hifiasm_opt_t;
extern hifiasm_opt_t asm_opt;