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assgin disconnected parts

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chhylp123
2021-04-28 20:27:43 -04:00
parent 2fc2268268
commit 71e91f3fc2
3 changed files with 10 additions and 7 deletions
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hic.cpp
+3 -1
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@@ -14598,7 +14598,7 @@ void print_kv_weight(kv_u_trans_t *ta)
void print_debug_hc_links(ha_ug_index* idx, bubble_type* bub, hc_links* lk, kv_u_trans_t *ta, kvec_pe_hit* hits)
{
uint64_t k, len = 0, shif = 64 - idx->uID_bits, beg, end;
uint64_t k, len = 0, occ = 0, shif = 64 - idx->uID_bits, beg, end;
hc_edge *e = NULL;
for (k = 0; k < hits->a.n; ++k)
{
@@ -14608,9 +14608,11 @@ void print_debug_hc_links(ha_ug_index* idx, bubble_type* bub, hc_links* lk, kv_u
if(IF_HOM(beg, *bub)) continue;
if(IF_HOM(end, *bub)) continue;
len += (hits->a.a[k].len>>32) + ((uint32_t)hits->a.a[k].len);
occ++;
}
fprintf(stderr, "# total Hi-C aligned bases: %lu\n", len);
fprintf(stderr, "# total Hi-C aligned pairs: %lu\n", occ);
for (k = 0; k < ta->n; k++)
{
e = get_hc_edge(lk, ta->a[k].qn, ta->a[k].tn, 0);