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back_up_hic

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chhylp123
2021-04-11 10:59:26 -04:00
parent 8f733750c4
commit 7235f6426f
4 changed files with 293 additions and 740 deletions
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Overlaps.h
-6
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@@ -1102,15 +1102,10 @@ typedef struct {
} kv_ca_buf_t;
typedef struct{
kvec_t(uint32_t) uIDs;
kvec_t(uint32_t) iDXs;
kvec_t(uint32_t) rescue_hom;
uint32_t* rUidx;
uint64_t* rUpos;
uint8_t* is_r_het;
uint32_t r_num, u_num;
uint32_t chain_num;
uint32_t l0_chain, l1_chain;
kvec_t(bed_in) bed;
kvec_t(uint32_t) topo_buf;
kvec_t(uint32_t) topo_res;
@@ -1181,7 +1176,6 @@ inline uint32_t get_origin_uid(uint32_t v, trans_chain* t_ch, uint32_t *off, uin
if(t_ch->rUpos[v>>1] == (uint64_t)-1) return (uint32_t)-1;
return (uint32_t)(((t_ch->rUidx[v>>1]>>1)<<1) + ((t_ch->rUidx[v>>1]^v)&1));
}
void get_chain_trans(trans_chain* t_ch, uint32_t id, uint32_t** x, uint32_t* x_occ, uint32_t** y, uint32_t* y_occ);
void chain_origin_trans_uid_by_distance(hap_cov_t *cov, asg_t *read_sg,
uint32_t *pri_a, uint32_t pri_n, uint32_t pri_beg, uint64_t *i_pri_len,
uint32_t *aux_a, uint32_t aux_n, uint32_t aux_beg, uint64_t *i_aux_len,