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freeze-r304

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chhylp123
2020-08-23 23:34:36 -04:00
parent 03cf0d475c
commit 724990cbe7
7 changed files with 235 additions and 74 deletions
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Hash_Table.h
+3 -2
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@@ -119,6 +119,7 @@ typedef struct {
int64_t *pre;
int32_t *indels;
int32_t *self_length;
int32_t *occ;
int64_t *tmp; // MUST BE 64-bit integer
int64_t length;
int64_t size;
@@ -144,8 +145,8 @@ int extra_begin, int extra_end, int error_threshold);
void overlap_region_sort_y_id(overlap_region *a, long long n);
void calculate_overlap_region_by_chaining(Candidates_list* candidates, overlap_region_alloc* overlap_list,
uint64_t readID, uint64_t readLength, All_reads* R_INF, double band_width_threshold, int add_beg_end);
void calculate_overlap_region_by_chaining(Candidates_list* candidates, overlap_region_alloc* overlap_list, kvec_t_u64_warp* chain_idx,
uint64_t readID, uint64_t readLength, All_reads* R_INF, double band_width_threshold, int add_beg_end, overlap_region* f_cigar);
void init_fake_cigar(Fake_Cigar* x);
void destory_fake_cigar(Fake_Cigar* x);