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reverted to the older k_mer_hit definition

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Heng Li
2020-03-27 10:40:31 -04:00
parent 10ed8b36ec
commit 7271c106e4
4 changed files with 40 additions and 48 deletions
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Hash_Table.h
+2 -19
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@@ -72,7 +72,6 @@ typedef struct
CIGAR cigar;
} window_list;
typedef struct
{
window_list* buffer;
@@ -128,25 +127,10 @@ typedef struct
typedef struct
{
uint64_t opos;
uint32_t self_offset; // offset on the target read
uint32_t readID:31, strand:1;
uint32_t offset, self_offset;
} k_mer_hit;
static inline uint32_t ha_hit_get_readID(const k_mer_hit *h)
{
return h->opos >> 33;
}
static inline uint32_t ha_hit_get_rev(const k_mer_hit *h)
{
return h->opos >> 32 & 1;
}
static inline uint32_t ha_hit_get_offset(const k_mer_hit *h)
{
return (uint32_t)h->opos;
}
typedef struct
{
long long* score;
@@ -160,7 +144,6 @@ typedef struct
typedef struct
{
k_mer_hit* list;
k_mer_hit* tmp;
long long length;
long long size;
Chain_Data chainDP;