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reverted to the older k_mer_hit definition

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Heng Li
2020-03-27 10:40:31 -04:00
parent 10ed8b36ec
commit 7271c106e4
4 changed files with 40 additions and 48 deletions
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htab.h
+8 -1
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@@ -10,11 +10,18 @@ typedef struct {
uint64_t rid:28, pos:27, rev:1, span:8;
} ha_mz1_t;
typedef struct {
uint64_t rid:28, pos:27, rev:1, span:8;
} ha_idxpos_t;
typedef struct { uint32_t n, m; ha_mz1_t *a; } ha_mz1_v;
struct ha_pt_s;
typedef struct ha_pt_s ha_pt_t;
struct ha_abuf_s;
typedef struct ha_abuf_s ha_abuf_t;
extern const unsigned char seq_nt4_table[256];
void *ha_ft_gen(const hifiasm_opt_t *asm_opt, All_reads *rs);
@@ -23,7 +30,7 @@ void ha_ft_destroy(void *h);
ha_pt_t *ha_pt_gen(const hifiasm_opt_t *asm_opt, const void *flt_tab, int read_from_store, All_reads *rs);
void ha_pt_destroy(ha_pt_t *h);
const uint64_t *ha_pt_get(const ha_pt_t *h, uint64_t hash, int *n);
const ha_idxpos_t *ha_pt_get(const ha_pt_t *h, uint64_t hash, int *n);
double yak_cputime(void);
void yak_reset_realtime(void);