bubble phasing

2026-10-06 09:08:12 +08:00 · 2020-11-21 20:50:31 -05:00
parent 3a1a3750e9
commit 73b5ef6769
3 changed files with 773 additions and 83 deletions
@@ -21,6 +21,11 @@

 #define HA_MIN_OV_DIFF       0.02 // min sequence divergence in an overlap

+typedef struct{
+    int *l, n; 
+    char **a;
+}enzyme;
+
 typedef struct {
 	int flag;
    int num_reads;
@@ -31,7 +36,7 @@ typedef struct {
 	char *fn_bin_list[2];
 	char *extract_list;
    char *hic_files[2];
-    char **hic_enzymes;
+    enzyme *hic_enzymes;
 	int extract_iter;
    int thread_num;
    int k_mer_length;