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r229: LIS score is still not exactly right

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Heng Li
2020-04-12 10:19:28 -04:00
parent 22b681b830
commit 75a89c214d
2 changed files with 2 additions and 2 deletions
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CommandLines.h
+1 -1
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@@ -3,7 +3,7 @@
#include <pthread.h> #include <pthread.h>
#define HA_VERSION "0.3.0-dirty-r228" #define HA_VERSION "0.3.0-dirty-r229"
#define VERBOSE 0 #define VERBOSE 0
Hash_Table.cpp
+1 -1
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@@ -372,7 +372,7 @@ int32_t ha_chain_lis_core(k_mer_hit *a, int32_t n_a, Chain_Data *dp, int32_t min
m = n_a; m = n_a;
} else m = ha_kmer_hit_lis(n_a, a, b, M); } else m = ha_kmer_hit_lis(n_a, a, b, M);
bw_pen = 1.0 / bw_thres; bw_pen = 1.0 / bw_thres;
dp->score[0] = 0, dp->pre[0] = -1, dp->indels[0] = 0, dp->self_length[0] = 0; dp->score[0] = min_sc, dp->pre[0] = -1, dp->indels[0] = 0, dp->self_length[0] = 0;
for (i = 1; i < m; ++i) { for (i = 1; i < m; ++i) {
int32_t j0 = b[i-1], j1 = b[i], score, dg; int32_t j0 = b[i-1], j1 = b[i], score, dg;
int32_t dx = (int32_t)a[j1].offset - (int32_t)a[j0].offset; int32_t dx = (int32_t)a[j1].offset - (int32_t)a[j0].offset;