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r186: fixed memory leaks when loading from disk

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Heng Li
2020-04-03 20:35:47 -04:00
parent 992322f8e3
commit 76de054331
6 changed files with 24 additions and 52 deletions
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Overlaps.cpp
+15 -24
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@@ -13398,8 +13398,6 @@ int load_ma_hit_ts(ma_hit_t_alloc** x, char* read_file_name)
}
void write_ma(ma_hit_t* x, FILE* fp)
{
fwrite(&(x->qns), sizeof(x->qns), 1, fp);
@@ -13466,35 +13464,28 @@ All_reads *RNF, char* output_file_name)
free(gfa_name);
}
int load_all_data_from_disk(ma_hit_t_alloc **sources, ma_hit_t_alloc **reverse_sources,
char* output_file_name)
int load_all_data_from_disk(ma_hit_t_alloc **sources, ma_hit_t_alloc **reverse_sources, char* output_file_name)
{
char* gfa_name = (char*)malloc(strlen(output_file_name)+25);
sprintf(gfa_name, "%s.ovlp", output_file_name);
if(!load_All_reads(&R_INF, gfa_name))
{
char* gfa_name = (char*)malloc(strlen(output_file_name)+25);
sprintf(gfa_name, "%s.ovlp", output_file_name);
if (!load_All_reads(&R_INF, gfa_name)) {
free(gfa_name);
return 0;
}
sprintf(gfa_name, "%s.ovlp.source", output_file_name);
if(!load_ma_hit_ts(sources, gfa_name))
{
return 0;
}
sprintf(gfa_name, "%s.ovlp.source", output_file_name);
if (!load_ma_hit_ts(sources, gfa_name)) {
free(gfa_name);
return 0;
}
sprintf(gfa_name, "%s.ovlp.reverse", output_file_name);
if(!load_ma_hit_ts(reverse_sources, gfa_name))
{
return 0;
}
sprintf(gfa_name, "%s.ovlp.reverse", output_file_name);
if (!load_ma_hit_ts(reverse_sources, gfa_name)) {
free(gfa_name);
return 0;
}
return 0;
}
free(gfa_name);
return 1;
return 1;
}
// count the number of outgoing arcs, excluding reduced arcs
static inline int count_out(const asg_t *g, uint32_t v)
{