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regen_scb

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This commit is contained in:
chhylp123
2026-05-03 03:34:23 -04:00
parent f5078f7b23
commit 7884b5ad88
15 changed files with 2177 additions and 133 deletions
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Process_Read.cpp
+24 -7
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@@ -125,6 +125,11 @@ void write_All_reads(All_reads* r, char* read_file_name)
}
}
mm = 3;
fwrite(&mm, sizeof(mm), 1, fp);
fwrite(&(r->tr[0]), sizeof(r->tr[0]), 1, fp);
fwrite(&(r->tr[1]), sizeof(r->tr[1]), 1, fp);
free(index_name);
fflush(fp);
fclose(fp);
@@ -235,11 +240,18 @@ int load_All_reads(All_reads* r, char* read_file_name)
MALLOC(r->rsc[i], (r->read_length[i]/sc_bn) + ((r->read_length[i]%sc_bn)?1:0));
f_flag += fread(r->rsc[i], sizeof(uint8_t), (r->read_length[i]/sc_bn) + ((r->read_length[i]%sc_bn)?1:0), fp);
}
mm = 0;
if(!feof(fp)) fread(&mm, sizeof(mm), 1, fp);
}
if(mm == 3) {
fread(&(r->tr[0]), sizeof(r->tr[0]), 1, fp);
fread(&(r->tr[1]), sizeof(r->tr[1]), 1, fp);
}
}
free(index_name);
fclose(fp);
fprintf(stderr, "Reads has been loaded.\n");
@@ -283,12 +295,17 @@ uint8_t load_cc_v(cc_v* r, char* read_file_name)
///typedef struct {size_t n, m; asg16_v *a; uint8_t *f; uint16_t *er; uint64_t bid;} cc_v;
asg16_v *z; int f_flag = 0;
uint64_t k, rn; uint32_t zn; f_flag += fread(&rn, sizeof(rn), 1, fp);
r->n = r->m = rn; MALLOC(r->a, r->n);
for (k = 0; k < r->n; k++) {
z = &(r->a[k]);
f_flag += fread(&zn, sizeof(zn), 1, fp);
z->n = z->m = zn; MALLOC(z->a, z->n);
f_flag += fread(z->a, sizeof((*(z->a))), zn, fp);
r->n = r->m = rn;
if(rn == 0) {
free(r->a); r->a = NULL;
} else {
MALLOC(r->a, r->n);
for (k = 0; k < r->n; k++) {
z = &(r->a[k]);
f_flag += fread(&zn, sizeof(zn), 1, fp);
z->n = z->m = zn; MALLOC(z->a, z->n);
f_flag += fread(z->a, sizeof((*(z->a))), zn, fp);
}
}
fflush(fp); fclose(fp);