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regen_scb

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chhylp123
2026-05-03 03:34:23 -04:00
parent f5078f7b23
commit 7884b5ad88
15 changed files with 2177 additions and 133 deletions
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htab.cpp
+20 -6
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@@ -9,6 +9,7 @@
#include "ksort.h"
#include "htab.h"
#include "Process_Read.h"
#include "ecovlp.h"
#define YAK_COUNTER_BITS 12
#define YAK_N_COUNTS (1<<YAK_COUNTER_BITS)
@@ -1627,12 +1628,11 @@ void refresh_pt_idx(void **flt_tab, ha_pt_t **ha_idx, All_reads *r, hifiasm_opt_
}
uint64_t tmp_pt_pro(void **r_flt_tab, ha_pt_t **r_ha_idx, All_reads *r, hifiasm_opt_t *opt, char *file_name, uint64_t rr, uint64_t tot_rr, uint64_t is_load)
uint64_t tmp_pt_pro(void **r_flt_tab, ha_pt_t **r_ha_idx, All_reads *r, cc_v* rcc, hifiasm_opt_t *opt, char *file_name, uint64_t rr, uint64_t tot_rr, uint64_t is_load)
{
char* gfa_name = (char*)malloc(strlen(file_name)+64);
FILE *fp = NULL; int f_flag = 0; uint64_t rr0 = (uint64_t)-1, tot_rr0 = (uint64_t)-1;
if(is_load) {
sprintf(gfa_name, "%s.r%lu.ht.bin", file_name, rr);
fp = fopen(gfa_name, "r");
@@ -1648,19 +1648,33 @@ uint64_t tmp_pt_pro(void **r_flt_tab, ha_pt_t **r_ha_idx, All_reads *r, hifiasm_
return 0;
}
sprintf(gfa_name, "%s.r%lu", file_name, rr);
if(!load_pt_index(r_flt_tab, r_ha_idx, r, opt, gfa_name)) {
destory_All_reads(r);
ha_pt_destroy(*r_ha_idx); (*r_ha_idx) = NULL;
ha_ft_destroy(*r_flt_tab); (*r_flt_tab) = NULL;
free(gfa_name);
return 0;
}
sprintf(gfa_name, "%s.r%lu.rec", file_name, rr);
if(!load_cc_v(rcc, gfa_name)) {
destory_All_reads(r);
ha_pt_destroy(*r_ha_idx); (*r_ha_idx) = NULL;
ha_ft_destroy(*r_flt_tab); (*r_flt_tab) = NULL;
destroy_cc_v(rcc);
free(gfa_name);
return 0;
}
fprintf(stderr, "[M::%s] restarting from round %lu\n", __func__, rr0);
} else {
sprintf(gfa_name, "%s.r%lu.rec", file_name, rr);
write_cc_v(rcc, gfa_name);
sprintf(gfa_name, "%s.r%lu", file_name, rr);
write_pt_index(*r_flt_tab, *r_ha_idx, r, opt, gfa_name);
sprintf(gfa_name, "%s.r%lu.ht.bin", file_name, rr);
fp = fopen(gfa_name, "w");
if (!fp) {