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collect contig alignment + renew_utg bug fixed

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chhylp123
2021-05-09 17:47:50 -04:00
parent 03adce6202
commit 7918396d21
7 changed files with 431 additions and 19 deletions
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Makefile
+2 -1
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@@ -6,7 +6,7 @@ CPPFLAGS=
INCLUDES=
OBJS= CommandLines.o Process_Read.o Assembly.o Hash_Table.o \
POA.o Correct.o Levenshtein_distance.o Overlaps.o Trio.o kthread.o Purge_Dups.o \
htab.o hist.o sketch.o anchor.o extract.o sys.o ksw2_extz2_sse.o hic.o rcut.o
htab.o hist.o sketch.o anchor.o extract.o sys.o ksw2_extz2_sse.o hic.o rcut.o horder.o
EXE= hifiasm
LIBS= -lz -lpthread -lm
@@ -73,3 +73,4 @@ sketch.o: kvec.h htab.h Process_Read.h Overlaps.h kdq.h CommandLines.h
sys.o: htab.h Process_Read.h Overlaps.h kvec.h kdq.h CommandLines.h
hic.o: hic.h
rcut.o: rcut.h
horder.o: horder.h