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collect contig alignment + renew_utg bug fixed

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chhylp123
2021-05-09 17:47:50 -04:00
parent 03adce6202
commit 7918396d21
7 changed files with 431 additions and 19 deletions
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hic.h
+14 -1
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@@ -11,7 +11,7 @@
hc_edge* get_hc_edge(hc_links* link, uint64_t src, uint64_t dest, uint64_t dir);
hc_edge* push_hc_edge(hc_linkeage* x, uint64_t uID, double weight, int dir, uint64_t* d);
void hic_analysis(ma_ug_t *ug, asg_t* read_g, trans_chain* t_ch);
void hic_analysis(ma_ug_t *ug, asg_t* read_g, trans_chain* t_ch, ug_opt_t *opt);
void hic_benchmark(ma_ug_t *ug, asg_t* read_g);
typedef struct {
@@ -54,6 +54,19 @@ typedef struct {
int8_t *s;
uint64_t xs;
} ps_t;
typedef struct {
uint64_t s, e, id, len;
} pe_hit;
typedef struct {
kvec_t(pe_hit) a;
kvec_t(uint64_t) idx;
kvec_t(uint64_t) occ;
uint64_t uID_bits;
uint64_t pos_mode;
} kvec_pe_hit;
#define P_het(B) ((B).num.n)
#define M_het(B) ((B).num.n + 1)
// #define IF_BUB(ID, B) ((B).index[(ID)] < (B).num.n)